HPC cluster

• General information
• HPC handbook
  • Scope of the IST HPC cluster
  • Cluster usage in a nutshell
  • Slurm commands for submitting, monitoring and cancelling jobs
  • Composing a Slurm script
  • Common Slurm errors and their cause
  • Cluster Storage
  • Installing software
  • External resources to get help
  • Backup of projects
  • Using GPU resources – Draft
• JupyterHub
  • Using GPUs with torch & Tensorflow
  • Using julia notebooks
• Information for advanced user
  • cryoSPARC
  • Using PIP + VIRTUALENV
  • SLURM Matlab Mathematica
  • Relion software package
  • SLURM crYOLO
  • 3D Cluster Visualization
• FAQ on the upgrade (from Debian10 to Debian11, and from Slurm16 to Slurm20) of the ISTA HPC Cluster.